Like others have said, the most time-consuming part is the belt change. On many vehicles, the SC belt is the outer-most belt. On the GT, it is the inner-most belt. As such, you need to remove the accessory belt and the highly specialized oil pump drive belt. None of this is particularly hard, just time consuming. Make sure you mark the tensioner on the oil pump drive belt very carefully so that you get it back in the right position. Like most other things on the GT, this tensioner is well designed and pretty easy to get back to the EXACT original location. For accessory belt, make sure the ribs are aligned on each and every pulley. You can see ~half the pulleys from the top and the other half from below.... just make sure you have them aligned.
As BlackICE metions, the EGR tube likes to play with your head a little bit and loosening up the bottom end can help you get it aligned to get the threads to start.
Make sure that you use the ARP bolts that Whipple includes as the stock bolts will not longer fit in a couple of the locations. I would recommend that you use Accufab's throttle body and inlet stiffener to get the most from the Whipple.